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  "Title": "Score Taxon-Level IgA Binding in IgA-Seq Experiments",
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  "Description": "Functions to calculate indices used to score\nimmunoglobulin A (IgA) binding of bacteria in IgA sequencing\n(IgA-Seq) experiments. This includes the original Kau and Palm\nindices and more recent methods as described in Jackson et al.\n(2020) <doi:10.1101/2020.08.19.257501>. Additionally the\npackage contains a function to simulate IgA-Seq data and an\nexample experimental data set for method testing.",
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  "Date/Publication": "2022-05-13 11:02:21 UTC",
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    {
      "page": "igaprobability",
      "title": "IgA Probability",
      "topics": [
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      ]
    },
    {
      "page": "igaprobabilityratio",
      "title": "IgA Probability Ratio",
      "topics": [
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    },
    {
      "page": "igascores",
      "title": "Generate various scores for IgA binding in IgA-Seq experiments",
      "topics": [
        "igascores"
      ]
    },
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      "page": "kauindex",
      "title": "Kau Index",
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      "title": "Extract name at a given taxonomic level from a full name in the \"p__;c__;o__;f__;g__;s__\" format",
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      "filename": "IgAScores.html",
      "title": "The IgAScores Package",
      "author": "Matthew Jackson",
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      "headings": [
        "Input data",
        "Example data",
        "Calculating scores for all taxa and samples in an experiment",
        "Calculating scores for a single taxon from a single sample",
        "Simulating IgA-Seq data",
        "Additional examples"
      ],
      "created": "2020-08-07 15:04:01",
      "modified": "2020-08-21 09:35:23",
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