Package: IgAScores 0.1.2.9000

IgAScores: Score Taxon-Level IgA Binding in IgA-Seq Experiments

Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.

Authors:Matthew Jackson [aut, cre, cph]

IgAScores_0.1.2.9000.tar.gz
IgAScores_0.1.2.9000.zip(r-4.7)IgAScores_0.1.2.9000.zip(r-4.6)IgAScores_0.1.2.9000.zip(r-4.5)
IgAScores_0.1.2.9000.tgz(r-4.6-any)IgAScores_0.1.2.9000.tgz(r-4.5-any)
IgAScores_0.1.2.9000.tar.gz(r-4.7-any)IgAScores_0.1.2.9000.tar.gz(r-4.6-any)
IgAScores_0.1.2.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
IgAScores/json (API)
NEWS

# Install 'IgAScores' in R:
install.packages('IgAScores', repos = c('https://microbialman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/microbialman/igascores/issues

Datasets:
  • oligoMeta - Metadata for the OligoMM12-Colitis experiment used as an example in the IgAScores package
  • oligoSpecies - Species level counts for the OligoMM12-Colitis experiment used as an example in the IgAScores package

On CRAN:

Conda:

4.15 score 2 stars 14 scripts 153 downloads 1 mentions 8 exports 0 dependencies

Last updated from:0e216b8280. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK105
source / vignettesOK262
linux-release-x86_64OK104
macos-release-arm64OK122
macos-oldrel-arm64OK140
windows-develOK64
windows-releaseOK69
windows-oldrelOK96
wasm-releaseOK93

Exports:igaprobabilityigaprobabilityratioigascoreskauindexpalmindexrelabundsimulateigaseqtaxnamesplit

Dependencies:

The IgAScores Package

Matthew Jackson

Rendered fromIgAScores.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2020-08-21
Started: 2020-08-07