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IgAScores - Score Taxon-Level IgA Binding in IgA-Seq Experiments
Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.
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4.15 score 2 stars 14 scripts 153 downloadsVennItem - Generate Venn Diagrams with Items Listed in the Sections
Generate Venn diagrams from two or three sets, displaying the overlapping items as lists in the appropriate sections. The lists can be split into columns or shortened for large sets and the plot is generated using 'ggplot2' allowing further customisations.
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3.48 score 2 stars 3 scripts 136 downloads